Variant report

Variant	rs12279820
Chromosome Location	chr11:32546663-32546664
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10767947	0.83[ASN][1000 genomes]
rs11031852	0.83[ASN][1000 genomes]
rs12277613	0.81[EUR][1000 genomes]
rs12279825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12285345	0.83[ASN][1000 genomes]
rs12287631	0.83[ASN][1000 genomes]
rs12789525	1.00[ASN][1000 genomes]
rs12793279	0.83[ASN][1000 genomes]
rs35176275	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129941	0.83[ASN][1000 genomes]
rs71466595	1.00[ASN][1000 genomes]
rs7950535	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832108	chr11:32395937-32560583	Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32546600-32547800	Weak transcription	Fetal Kidney	kidney

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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