Variant report

Variant	rs1228034
Chromosome Location	chr11:48030640-48030641
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:48028573..48030899-chr11:48036273..48038160,2	K562	blood:
2	chr11:48023169..48025909-chr11:48028991..48031119,2	K562	blood:

Variant related genes	Relation type
ENSG00000254879	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11039501	0.89[AMR][1000 genomes]
rs11039503	0.89[AMR][1000 genomes]
rs1228031	0.82[AFR][1000 genomes]
rs1228032	0.82[AFR][1000 genomes]
rs1228036	0.85[AFR][1000 genomes]
rs1234904	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052397	chr11:47675470-48594256	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv530620	chr11:47765455-48664555	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
3	nsv1036992	chr11:47794621-48666024	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv897326	chr11:47891334-48035474	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1036451	chr11:47902321-48616646	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv541037	chr11:47902321-48616646	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
7	nsv1047490	chr11:47916708-48388686	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
8	nsv1044266	chr11:47929586-48276132	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
9	nsv541038	chr11:47929586-48276132	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
10	nsv1053145	chr11:47967902-48086950	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv870381	chr11:47989434-48142648	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
12	esv3396029	chr11:47993857-48241494	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
13	nsv528641	chr11:48004369-48043053	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv897327	chr11:48004369-48911660	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
15	nsv869124	chr11:48014539-48783113	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
16	nsv1051805	chr11:48016488-48378048	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:48018800-48042000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr11:48024400-48032000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr11:48025000-48045200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr11:48025600-48031800	Enhancers	K562	blood
5	chr11:48026000-48039200	Weak transcription	Fetal Kidney	kidney
6	chr11:48026400-48039200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr11:48026800-48032000	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr11:48027400-48037600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr11:48027400-48044000	Enhancers	Primary T cells fromperipheralblood	blood
10	chr11:48027600-48034800	Weak transcription	Small Intestine	intestine
11	chr11:48027800-48037600	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr11:48027800-48037800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr11:48027800-48039000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr11:48028000-48032400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr11:48028000-48032800	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr11:48028000-48034000	Weak transcription	Fetal Intestine Large	intestine
17	chr11:48028000-48034200	Weak transcription	Primary hematopoietic stem cells	blood
18	chr11:48028000-48034600	Weak transcription	Fetal Intestine Small	intestine
19	chr11:48028000-48038800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr11:48028200-48031800	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr11:48028200-48033800	Weak transcription	Placenta	Placenta
22	chr11:48028200-48034000	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr11:48028200-48034800	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr11:48028400-48030800	Enhancers	Osteobl	bone
25	chr11:48028400-48031400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
26	chr11:48028400-48031600	Enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr11:48028400-48032400	Weak transcription	Lung	lung
28	chr11:48028400-48032400	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr11:48028400-48032600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr11:48028400-48032800	Weak transcription	Gastric	stomach
31	chr11:48028400-48033400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
32	chr11:48028400-48034000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr11:48028400-48034800	Weak transcription	Brain Angular Gyrus	brain
34	chr11:48028400-48034800	Weak transcription	Fetal Muscle Leg	muscle
35	chr11:48028400-48034800	Weak transcription	Right Atrium	heart
36	chr11:48028400-48038800	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr11:48028400-48039200	Weak transcription	Fetal Stomach	stomach
38	chr11:48028600-48032600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr11:48028600-48032600	Weak transcription	Brain Cingulate Gyrus	brain
40	chr11:48028600-48033600	Weak transcription	Brain Anterior Caudate	brain
41	chr11:48028600-48033600	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr11:48028600-48033600	Weak transcription	Fetal Heart	heart
43	chr11:48028600-48033800	Weak transcription	NH-A	brain
44	chr11:48028600-48034800	Weak transcription	Colon Smooth Muscle	Colon
45	chr11:48028600-48035200	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr11:48028600-48035600	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr11:48029400-48031000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
48	chr11:48029400-48032800	Weak transcription	Primary T cells from cord blood	blood
49	chr11:48029400-48033800	Weak transcription	Brain Substantia Nigra	brain
50	chr11:48029400-48034000	Weak transcription	Duodenum Mucosa	Duodenum

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