Variant report

Variant	rs12281180
Chromosome Location	chr11:63222607-63222608
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11231457	0.90[ASN][1000 genomes]
rs11231498	0.81[ASN][1000 genomes]
rs11822642	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11824964	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12286792	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2282480	0.81[ASN][1000 genomes]
rs4553371	0.86[ASN][1000 genomes]
rs60688843	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61929667	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7104584	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	esv1822068	chr11:63146055-63239984	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63216800-63224600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr11:63217000-63227200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:63217400-63227200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:63220200-63227400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr11:63220400-63227200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr11:63221000-63227000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr11:63221200-63225400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr11:63221200-63225800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr11:63221200-63226600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr11:63221400-63224600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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