Variant report

Variant	rs12281898
Chromosome Location	chr11:63402404-63402405
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA2	chr11:63402046-63402478	A549	lung:	n/a	n/a
2	FOXA2	chr11:63402132-63402490	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:63246560..63248292-chr11:63401337..63403155,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000256789	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12275497	0.81[AFR][1000 genomes]
rs12279513	0.81[AFR][1000 genomes]
rs12285282	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63382400-63409800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr11:63388800-63406400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr11:63388800-63414200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:63390600-63409600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr11:63390800-63414200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr11:63391200-63410400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:63391200-63418600	Weak transcription	Psoas Muscle	Psoas
8	chr11:63393800-63426600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr11:63394000-63406000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr11:63394000-63409200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:63394200-63409400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr11:63394400-63406000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
13	chr11:63394600-63403800	Strong transcription	Osteobl	bone
14	chr11:63394600-63406000	Strong transcription	Adipose Nuclei	Adipose
15	chr11:63394800-63405600	Strong transcription	NHDF-Ad	bronchial
16	chr11:63395000-63404000	Strong transcription	Placenta	Placenta
17	chr11:63395000-63405000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr11:63395000-63426800	Strong transcription	Dnd41	blood
19	chr11:63395200-63406200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr11:63395400-63403200	Strong transcription	HUES64 Cell Line	embryonic stem cell
21	chr11:63395400-63403400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr11:63395400-63406200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr11:63395600-63403000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr11:63395600-63403600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr11:63395600-63404000	Strong transcription	Primary T cells fromperipheralblood	blood
26	chr11:63395600-63404000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr11:63395600-63404400	Strong transcription	Fetal Muscle Leg	muscle
28	chr11:63395600-63421000	Strong transcription	Fetal Muscle Trunk	muscle
29	chr11:63395800-63404600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
30	chr11:63396000-63404600	Strong transcription	Fetal Stomach	stomach
31	chr11:63396200-63403800	Strong transcription	HUES6 Cell Line	embryonic stem cell
32	chr11:63396200-63403800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr11:63396400-63403200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr11:63396400-63403200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr11:63396600-63404400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr11:63397200-63402800	Weak transcription	Primary B cells from cord blood	blood
37	chr11:63397200-63405000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr11:63397400-63409000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr11:63397800-63430800	Weak transcription	Fetal Brain Male	brain
40	chr11:63398800-63403200	Weak transcription	Gastric	stomach
41	chr11:63398800-63408400	Weak transcription	Brain Cingulate Gyrus	brain
42	chr11:63398800-63409000	Weak transcription	Brain Germinal Matrix	brain
43	chr11:63398800-63409600	Weak transcription	Brain Anterior Caudate	brain
44	chr11:63398800-63412400	Weak transcription	Pancreas	Pancrea
45	chr11:63398800-63420200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr11:63398800-63421400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr11:63398800-63426800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr11:63399000-63402800	Weak transcription	HSMMtube	muscle
49	chr11:63399000-63403000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr11:63399000-63408400	Weak transcription	Duodenum Mucosa	Duodenum

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