Variant report

Variant rs12281924
Chromosome Location chr11:113345987-113345988
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:53 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:113344800-113346000 Flanking Active TSS Ganglion Eminence derived primary cultured neurospheres brain
2 chr11:113344800-113346600 Bivalent Enhancer Fetal Muscle Trunk muscle
3 chr11:113344800-113346600 Enhancers Pancreas Pancrea
4 chr11:113344800-113346800 Bivalent/Poised TSS iPS-18 Cell Line embryonic stem cell
5 chr11:113344800-113346800 Bivalent/Poised TSS iPS-20b Cell Line embryonic stem cell
6 chr11:113345000-113346000 Bivalent Enhancer Adipose Nuclei Adipose
7 chr11:113345000-113346000 Bivalent Enhancer Lung lung
8 chr11:113345000-113346200 Active TSS Pancreatic Islets Pancreatic Islet
9 chr11:113345000-113346400 Bivalent/Poised TSS HUES48 Cell Line embryonic stem cell
10 chr11:113345000-113346400 Active TSS iPS-15b Cell Line embryonic stem cell
11 chr11:113345000-113346400 Enhancers Gastric stomach
12 chr11:113345000-113346600 Bivalent Enhancer Placenta Placenta
13 chr11:113345000-113346600 Bivalent Enhancer Spleen Spleen
14 chr11:113345000-113346800 Bivalent/Poised TSS HUES64 Cell Line embryonic stem cell
15 chr11:113345200-113346000 Active TSS Brain Substantia Nigra brain
16 chr11:113345200-113346200 Bivalent/Poised TSS H1 Cell Line embryonic stem cell
17 chr11:113345200-113346200 Active TSS HSMM muscle
18 chr11:113345200-113346400 Bivalent Enhancer H1 Derived Mesenchymal Stem Cells ES cell derived
19 chr11:113345200-113346400 Active TSS H9 Cell Line embryonic stem cell
20 chr11:113345200-113346400 Bivalent/Poised TSS hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
21 chr11:113345200-113346400 Bivalent/Poised TSS HUES6 Cell Line embryonic stem cell
22 chr11:113345200-113346400 Active TSS iPS DF 6.9 Cell Line embryonic stem cell
23 chr11:113345200-113346600 Bivalent Enhancer Primary hematopoietic stem cells G-CSF-mobilized Female --
24 chr11:113345200-113347000 Active TSS Brain Anterior Caudate brain
25 chr11:113345400-113346000 Flanking Bivalent TSS/Enh H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
26 chr11:113345400-113346000 Transcr. at gene 5' and 3' iPS DF 19.11 Cell Line embryonic stem cell
27 chr11:113345400-113346000 Bivalent/Poised TSS Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
28 chr11:113345400-113346200 Active TSS ES-WA7 Cell Line embryonic stem cell
29 chr11:113345400-113346200 Active TSS Right Atrium heart
30 chr11:113345600-113346000 Bivalent/Poised TSS NHEK skin
31 chr11:113345600-113346200 Active TSS Breast Myoepithelial Primary Cells Breast
32 chr11:113345600-113346400 Bivalent/Poised TSS Duodenum Mucosa Duodenum
33 chr11:113345600-113346400 Bivalent Enhancer Stomach Smooth Muscle stomach
34 chr11:113345600-113346600 Bivalent/Poised TSS Fetal Brain Female brain
35 chr11:113345600-113346600 Enhancers Ovary ovary
36 chr11:113345800-113346000 Bivalent/Poised TSS Muscle Satellite Cultured Cells --
37 chr11:113345800-113346000 Active TSS Cortex derived primary cultured neurospheres brain
38 chr11:113345800-113346000 Bivalent/Poised TSS Foreskin Fibroblast Primary Cells skin01 Skin
39 chr11:113345800-113346000 Bivalent/Poised TSS Foreskin Fibroblast Primary Cells skin02 Skin
40 chr11:113345800-113346000 Bivalent/Poised TSS Foreskin Keratinocyte Primary Cells skin03 Skin
41 chr11:113345800-113346000 Bivalent/Poised TSS Foreskin Melanocyte Primary Cells skin03 Skin
42 chr11:113345800-113346000 Bivalent/Poised TSS Brain Hippocampus Middle brain
43 chr11:113345800-113346000 Bivalent/Poised TSS Colonic Mucosa Colon
44 chr11:113345800-113346000 Bivalent Enhancer Fetal Stomach stomach
45 chr11:113345800-113346000 Bivalent/Poised TSS Right Ventricle heart
46 chr11:113345800-113346200 Bivalent/Poised TSS hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
47 chr11:113345800-113346200 Bivalent/Poised TSS Brain Germinal Matrix brain
48 chr11:113345800-113346200 Bivalent/Poised TSS Psoas Muscle Psoas
49 chr11:113345800-113346200 Active TSS HMEC breast
50 chr11:113345800-113346400 Active TSS ES-UCSF4 Cell Line embryonic stem cell

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