Variant report
| Variant | rs12282387 |
|---|---|
| Chromosome Location | chr11:4948148-4948149 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:5)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:5 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | FOS | chr11:4947888-4948207 | MCF10A-Er-Src | breast: | n/a | chr11:4948019-4948030 chr11:4948020-4948027 chr11:4948020-4948029 |
| 2 | FOS | chr11:4947871-4948248 | MCF10A-Er-Src | breast: | n/a | chr11:4948019-4948030 chr11:4948020-4948027 chr11:4948020-4948029 |
| 3 | FOS | chr11:4947784-4948211 | MCF10A-Er-Src | breast: | n/a | chr11:4948019-4948030 chr11:4948020-4948027 chr11:4948020-4948029 |
| 4 | MAFK | chr11:4947890-4948219 | IMR90 | lung: | n/a | n/a |
| 5 | FOS | chr11:4947850-4948211 | MCF10A-Er-Src | breast: | n/a | chr11:4948019-4948030 chr11:4948020-4948027 chr11:4948020-4948029 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| OR51G1 | TF binding region |
rSNPs within LD-proxies of this variant (count:9)
| rs_ID | r2[population] |
|---|---|
| rs11034697 | 0.84[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12276538 | 0.92[YRI][hapmap] |
| rs12277863 | 0.92[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12283081 | 1.00[AMR][1000 genomes] |
| rs59844966 | 1.00[AMR][1000 genomes] |
| rs61995697 | 1.00[AMR][1000 genomes] |
| rs7119891 | 1.00[AMR][1000 genomes] |
| rs7937103 | 1.00[AMR][1000 genomes] |
| rs7947674 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1054847 | chr11:4642875-5200656 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 72 gene(s) | inside rSNPs | diseases |
| 2 | esv2758254 | chr11:4907893-5135331 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 42 gene(s) | inside rSNPs | diseases |
| 3 | esv2759799 | chr11:4907893-5135331 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 42 gene(s) | inside rSNPs | diseases |
| 4 | nsv7652 | chr11:4946245-4997769 | Enhancers Flanking Active TSS Weak transcription | TF binding regionCpG islandChromatin interactive region | 19 gene(s) | inside rSNPs | diseases |
| 5 | nsv1052130 | chr11:4948148-4974017 | Flanking Active TSS Enhancers | TF binding regionChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
