Variant report

Variant	rs12283078
Chromosome Location	chr11:108559912-108559913
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10789676	0.82[YRI][hapmap]
rs10890883	0.83[YRI][hapmap]
rs12284874	1.00[YRI][hapmap]
rs12293384	1.00[YRI][hapmap]
rs3781864	0.83[YRI][hapmap]
rs3781866	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898388	chr11:108440814-108724639	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv832264	chr11:108449613-108623720	ZNF genes & repeats Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108536600-108578400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:108537800-108560200	Weak transcription	Small Intestine	intestine
3	chr11:108538200-108574800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr11:108540400-108560600	Weak transcription	Pancreas	Pancrea
5	chr11:108541400-108562800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:108541400-108578200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr11:108543600-108575200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr11:108544200-108569000	Weak transcription	Fetal Heart	heart
9	chr11:108546800-108561000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr11:108546800-108569400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr11:108548200-108560400	Weak transcription	Spleen	Spleen
12	chr11:108548200-108560600	Weak transcription	Esophagus	oesophagus
13	chr11:108548200-108561000	Weak transcription	Lung	lung
14	chr11:108548200-108561200	Weak transcription	Gastric	stomach
15	chr11:108548200-108562800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:108548200-108577600	Weak transcription	Colonic Mucosa	Colon
17	chr11:108548400-108577200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr11:108548600-108560000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr11:108548600-108570200	Weak transcription	Fetal Kidney	kidney
20	chr11:108548600-108577400	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr11:108548800-108561200	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr11:108548800-108561200	Weak transcription	Rectal Smooth Muscle	rectum
23	chr11:108548800-108564200	Weak transcription	Hela-S3	cervix
24	chr11:108548800-108577400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr11:108549000-108565800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr11:108549200-108577400	Weak transcription	Right Ventricle	heart
27	chr11:108550400-108560000	Weak transcription	Colon Smooth Muscle	Colon
28	chr11:108550400-108565200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr11:108550800-108561200	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr11:108550800-108564200	Weak transcription	Fetal Brain Male	brain
31	chr11:108551200-108561000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr11:108551200-108561000	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr11:108552400-108564200	Weak transcription	HMEC	breast
34	chr11:108554000-108560600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr11:108554400-108561000	Weak transcription	Thymus	Thymus
36	chr11:108554400-108577800	Weak transcription	Psoas Muscle	Psoas
37	chr11:108556200-108561800	Strong transcription	Rectal Mucosa Donor 29	rectum
38	chr11:108556200-108564400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr11:108556200-108566200	Strong transcription	Primary T cells from cord blood	blood
40	chr11:108556200-108566400	Strong transcription	Liver	Liver
41	chr11:108556200-108567000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr11:108556200-108567400	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chr11:108556200-108567800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr11:108556400-108561800	Strong transcription	Primary hematopoietic stem cells	blood
45	chr11:108556400-108565800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
46	chr11:108556400-108566400	Strong transcription	Primary monocytes fromperipheralblood	blood
47	chr11:108556400-108566800	Strong transcription	Primary B cells from peripheral blood	blood
48	chr11:108556600-108566400	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr11:108556600-108566800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
50	chr11:108556800-108561800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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