Variant report

Variant	rs12283397
Chromosome Location	chr11:86261325-86261326
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12270469	1.00[AMR][1000 genomes]
rs12284853	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv898056	chr11:86156848-86304402	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv555665	chr11:86230898-86417553	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86237800-86262200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:86249800-86261800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr11:86250400-86261600	Weak transcription	Gastric	stomach
4	chr11:86251200-86261600	Weak transcription	Right Ventricle	heart
5	chr11:86256600-86262400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr11:86257800-86262200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr11:86258800-86262200	Enhancers	HUVEC	blood vessel
8	chr11:86258800-86263400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr11:86258800-86263400	Enhancers	Fetal Brain Male	brain
10	chr11:86258800-86263400	Enhancers	Psoas Muscle	Psoas
11	chr11:86258800-86264600	Enhancers	Right Atrium	heart
12	chr11:86259000-86261400	Enhancers	Osteobl	bone
13	chr11:86259000-86263200	Weak transcription	Brain Germinal Matrix	brain
14	chr11:86259200-86261400	Weak transcription	Lung	lung
15	chr11:86259200-86262200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr11:86259200-86262200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr11:86259200-86262400	Weak transcription	Ovary	ovary
18	chr11:86259200-86264400	Weak transcription	Fetal Muscle Trunk	muscle
19	chr11:86259400-86261600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr11:86259400-86261600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr11:86259400-86262200	Weak transcription	A549	lung
22	chr11:86259400-86262600	Weak transcription	Fetal Heart	heart
23	chr11:86259600-86262200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr11:86259600-86262200	Weak transcription	HSMM	muscle
25	chr11:86259600-86262600	Weak transcription	Rectal Smooth Muscle	rectum
26	chr11:86259600-86263000	Weak transcription	Fetal Thymus	thymus
27	chr11:86259600-86269800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr11:86259600-86270400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr11:86259600-86270800	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr11:86259800-86270800	Weak transcription	Brain Hippocampus Middle	brain
31	chr11:86260000-86261400	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr11:86260000-86261400	Weak transcription	Spleen	Spleen
33	chr11:86260000-86261600	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr11:86260000-86261600	Weak transcription	Stomach Smooth Muscle	stomach
35	chr11:86260000-86261800	Weak transcription	Fetal Muscle Leg	muscle
36	chr11:86260000-86262000	Weak transcription	Stomach Mucosa	stomach
37	chr11:86260000-86262200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr11:86260000-86262200	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr11:86260000-86262200	Weak transcription	HMEC	breast
40	chr11:86260000-86262200	Weak transcription	HSMMtube	muscle
41	chr11:86260000-86262400	Weak transcription	Fetal Lung	lung
42	chr11:86260000-86262600	Weak transcription	Colonic Mucosa	Colon
43	chr11:86260000-86262800	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr11:86260000-86263400	Weak transcription	Fetal Stomach	stomach
45	chr11:86260000-86264000	Enhancers	Fetal Intestine Small	intestine
46	chr11:86260000-86266200	Weak transcription	Brain Cingulate Gyrus	brain
47	chr11:86260000-86268800	Weak transcription	Fetal Kidney	kidney
48	chr11:86260000-86270200	Weak transcription	Brain Angular Gyrus	brain
49	chr11:86260000-86270200	Weak transcription	Brain Substantia Nigra	brain
50	chr11:86260200-86261400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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