Variant report

Variant	rs12283723
Chromosome Location	chr11:101883343-101883344
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:101883078..101885810-chr11:101977897..101980390,2	MCF-7	breast:
2	chr11:101877251..101879953-chr11:101882606..101885074,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260008	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12272470	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12282071	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362945	chr11:101736547-102114246	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898333	chr11:101832670-102079986	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101827200-101883400	Weak transcription	Aorta	Aorta
2	chr11:101879400-101884400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:101880400-101884600	Enhancers	Placenta Amnion	Placenta Amnion
4	chr11:101880800-101885800	Enhancers	Placenta	Placenta
5	chr11:101881800-101885400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr11:101882200-101883600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr11:101882400-101883400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr11:101882600-101883600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr11:101882600-101883600	Weak transcription	HUVEC	blood vessel
10	chr11:101882600-101884000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr11:101882600-101884600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:101882600-101887400	Weak transcription	Osteobl	bone
13	chr11:101882800-101887600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr11:101882800-101887600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr11:101883000-101887600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr11:101883200-101883400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr11:101883200-101883800	Enhancers	Hela-S3	cervix
18	chr11:101883200-101884000	Enhancers	NHEK	skin
19	chr11:101883200-101884200	Enhancers	Dnd41	blood
20	chr11:101883200-101884200	Enhancers	HepG2	liver
21	chr11:101883200-101884600	Enhancers	Fetal Thymus	thymus

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