Variant report

Variant	rs12284689
Chromosome Location	chr11:100950544-100950545
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10895062	0.94[AFR][1000 genomes]
rs11224590	0.83[AFR][1000 genomes]
rs11224591	0.83[AFR][1000 genomes]
rs11571147	0.84[AFR][1000 genomes]
rs12275538	0.88[AFR][1000 genomes]
rs12280675	0.94[AFR][1000 genomes]
rs12286055	1.00[YRI][hapmap]
rs12288780	0.83[AFR][1000 genomes]
rs34634647	0.83[AFR][1000 genomes]
rs7928851	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100905400-100997600	Weak transcription	Left Ventricle	heart
2	chr11:100937400-100953800	Weak transcription	Aorta	Aorta
3	chr11:100947000-100950600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr11:100950400-100950800	Strong transcription	Pancreatic Islets	Pancreatic Islet
5	chr11:100950400-100950800	Strong transcription	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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