Variant report

Variant	rs12284824
Chromosome Location	chr11:93301127-93301128
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:93296559..93298205-chr11:93298979..93301756,2	K562	blood:
2	chr11:93298565..93302751-chr11:93303785..93308130,4	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11020414	0.91[AMR][1000 genomes]
rs12289503	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv1039623	chr11:93141461-93328739	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93298400-93302800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr11:93300200-93301200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr11:93300200-93301400	Enhancers	Stomach Mucosa	stomach
4	chr11:93300200-93305200	Enhancers	Liver	Liver
5	chr11:93300400-93301200	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr11:93300400-93301200	Enhancers	Duodenum Smooth Muscle	Duodenum
7	chr11:93300400-93301200	Enhancers	Ovary	ovary
8	chr11:93300400-93301200	Enhancers	A549	lung
9	chr11:93300400-93301400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr11:93300400-93301400	Enhancers	Adipose Nuclei	Adipose
11	chr11:93300400-93301400	Enhancers	Hela-S3	cervix
12	chr11:93300400-93301600	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr11:93300400-93301600	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr11:93300600-93301200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr11:93300600-93301200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr11:93300600-93301200	Enhancers	Aorta	Aorta
17	chr11:93300600-93301200	Enhancers	Fetal Intestine Large	intestine
18	chr11:93300600-93301200	Enhancers	Fetal Lung	lung
19	chr11:93300600-93301200	Enhancers	Gastric	stomach
20	chr11:93300600-93301200	Enhancers	Left Ventricle	heart
21	chr11:93300600-93301200	Enhancers	Pancreas	Pancrea
22	chr11:93300600-93301200	Enhancers	Rectal Mucosa Donor 29	rectum
23	chr11:93300600-93301200	Enhancers	Rectal Smooth Muscle	rectum
24	chr11:93300600-93301200	Enhancers	Sigmoid Colon	Sigmoid Colon
25	chr11:93300600-93301200	Flanking Active TSS	Stomach Smooth Muscle	stomach
26	chr11:93300600-93301400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr11:93300600-93301400	Enhancers	Colon Smooth Muscle	Colon
28	chr11:93300600-93301400	Enhancers	Fetal Muscle Leg	muscle
29	chr11:93300600-93301400	Enhancers	Fetal Stomach	stomach
30	chr11:93300600-93301400	Enhancers	Rectal Mucosa Donor 31	rectum
31	chr11:93300600-93301600	Enhancers	Psoas Muscle	Psoas
32	chr11:93300800-93301200	Enhancers	Fetal Intestine Small	intestine
33	chr11:93300800-93301400	Enhancers	Small Intestine	intestine
34	chr11:93300800-93303000	Weak transcription	HepG2	liver
35	chr11:93300800-93305000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr11:93301000-93301200	Enhancers	Osteobl	bone
37	chr11:93301000-93303400	Weak transcription	Duodenum Mucosa	Duodenum
38	chr11:93301000-93303800	Weak transcription	HSMM	muscle
39	chr11:93301000-93304600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr11:93301000-93306400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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