Variant report

Variant	rs12288526
Chromosome Location	chr11:65978023-65978024
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:65839190..65841660-chr11:65977914..65980146,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12291694	0.83[AFR][1000 genomes]
rs12291895	0.83[AFR][1000 genomes]
rs3814748	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3335923	chr11:65741698-66175759	Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
2	esv1819302	chr11:65787660-66007018	Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	esv3407551	chr11:65794503-66158322	Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
4	esv3332923	chr11:65961593-65981589	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65950200-65978400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr11:65957000-65978400	Weak transcription	Brain Angular Gyrus	brain
3	chr11:65958800-65978600	Weak transcription	Pancreas	Pancrea
4	chr11:65958800-65983600	Weak transcription	Small Intestine	intestine
5	chr11:65958800-65989200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr11:65959200-65989400	Weak transcription	K562	blood
7	chr11:65959400-65983400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr11:65959600-65978400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr11:65959600-65983600	Weak transcription	Colonic Mucosa	Colon
10	chr11:65960200-65984000	Weak transcription	Fetal Heart	heart
11	chr11:65960600-65980600	Weak transcription	Fetal Kidney	kidney
12	chr11:65960600-65983600	Weak transcription	Fetal Brain Male	brain
13	chr11:65961200-65983600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr11:65961400-66011200	Weak transcription	Psoas Muscle	Psoas
15	chr11:65961600-65979000	Weak transcription	Dnd41	blood
16	chr11:65962200-65983800	Weak transcription	Colon Smooth Muscle	Colon
17	chr11:65962400-65983600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr11:65962800-65983600	Weak transcription	Brain Cingulate Gyrus	brain
19	chr11:65963000-65984200	Weak transcription	HUVEC	blood vessel
20	chr11:65963800-65978200	Weak transcription	Left Ventricle	heart
21	chr11:65964000-65983600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr11:65964000-65989600	Weak transcription	Stomach Mucosa	stomach
23	chr11:65966000-65979000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr11:65966400-65983600	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr11:65969400-65978200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr11:65972200-65978200	Weak transcription	Primary hematopoietic stem cells	blood
27	chr11:65974200-65983400	Weak transcription	NHEK	skin
28	chr11:65975400-65983600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr11:65976000-65978400	Weak transcription	Brain Germinal Matrix	brain
30	chr11:65976000-65983600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr11:65976400-65978600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr11:65976400-65989200	Strong transcription	Primary T helper cells fromperipheralblood	blood
33	chr11:65976400-65989600	Strong transcription	Primary T cells fromperipheralblood	blood
34	chr11:65976600-65978200	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr11:65976600-66006000	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr11:65976800-65980600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr11:65976800-65983600	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr11:65976800-65989600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr11:65976800-65996000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr11:65977000-65978200	Weak transcription	Brain Hippocampus Middle	brain
41	chr11:65977000-65978200	Weak transcription	Osteobl	bone
42	chr11:65977000-65978600	Weak transcription	Fetal Intestine Large	intestine
43	chr11:65977000-65978600	Weak transcription	HSMM	muscle
44	chr11:65977000-65979200	Weak transcription	NHLF	lung
45	chr11:65977000-65989800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
46	chr11:65977200-65978200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr11:65977200-65978200	Weak transcription	Liver	Liver
48	chr11:65977200-65978200	Weak transcription	Hela-S3	cervix
49	chr11:65977200-65978600	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr11:65977200-65978600	Weak transcription	A549	lung

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