Variant report

Variant	rs12289752
Chromosome Location	chr11:72561138-72561139
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10437750	0.82[ASN][1000 genomes]
rs10793049	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10898894	0.83[ASN][1000 genomes]
rs12288580	0.82[ASN][1000 genomes]
rs12293726	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12294533	0.83[ASN][1000 genomes]
rs2276379	0.81[ASN][1000 genomes]
rs4944816	0.94[ASN][1000 genomes]
rs55671951	0.90[ASN][1000 genomes]
rs60355221	0.90[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7943424	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3394774	chr11:72320884-72694077	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72540200-72616600	Strong transcription	Primary B cells from peripheral blood	blood
2	chr11:72540600-72589800	Strong transcription	Primary B cells from cord blood	blood
3	chr11:72543200-72562200	Weak transcription	A549	lung
4	chr11:72543200-72614800	Weak transcription	Psoas Muscle	Psoas
5	chr11:72543400-72603000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr11:72546800-72561400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr11:72547400-72561200	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr11:72550000-72600400	Weak transcription	Pancreas	Pancrea
9	chr11:72551200-72563000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:72552000-72567000	Weak transcription	NH-A	brain
11	chr11:72552200-72562000	Weak transcription	Esophagus	oesophagus
12	chr11:72552200-72575400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr11:72552200-72580400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr11:72552400-72597400	Weak transcription	HMEC	breast
15	chr11:72552800-72578000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr11:72553400-72567000	Weak transcription	HUVEC	blood vessel
17	chr11:72553600-72576000	Weak transcription	NHEK	skin
18	chr11:72554400-72564000	Weak transcription	Brain Germinal Matrix	brain
19	chr11:72554400-72567000	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr11:72554400-72567000	Weak transcription	Adipose Nuclei	Adipose
21	chr11:72554400-72567200	Weak transcription	Brain Substantia Nigra	brain
22	chr11:72554400-72574200	Weak transcription	Aorta	Aorta
23	chr11:72554400-72576000	Weak transcription	Brain Cingulate Gyrus	brain
24	chr11:72554600-72563200	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr11:72554600-72567000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr11:72554600-72567600	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr11:72554600-72567800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr11:72554600-72568000	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr11:72554600-72570600	Weak transcription	Colonic Mucosa	Colon
30	chr11:72554600-72577000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr11:72554600-72577800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr11:72554600-72580400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr11:72554600-72595800	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr11:72554600-72596600	Weak transcription	Fetal Brain Female	brain
35	chr11:72554800-72567200	Weak transcription	Colon Smooth Muscle	Colon
36	chr11:72554800-72578000	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr11:72554800-72578200	Weak transcription	Duodenum Mucosa	Duodenum
38	chr11:72555400-72568000	Weak transcription	NHLF	lung
39	chr11:72555600-72567200	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr11:72555600-72567600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr11:72555600-72567800	Weak transcription	Fetal Brain Male	brain
42	chr11:72555600-72575200	Weak transcription	Right Ventricle	heart
43	chr11:72555600-72586400	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr11:72555800-72567000	Weak transcription	Brain Anterior Caudate	brain
45	chr11:72555800-72567000	Weak transcription	Fetal Intestine Small	intestine
46	chr11:72555800-72574000	Weak transcription	Left Ventricle	heart
47	chr11:72555800-72580600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr11:72555800-72595600	Weak transcription	Thymus	Thymus
49	chr11:72556000-72567000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr11:72556000-72586400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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