Variant report

Variant	rs12290484
Chromosome Location	chr11:24657554-24657555
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12277209	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1396838	0.81[ASN][1000 genomes]
rs1546475	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34897664	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4338527	0.81[ASN][1000 genomes]
rs56108236	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73433093	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs73433094	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs73433096	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs73433100	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055026	chr11:24151133-24737122	Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1037744	chr11:24174588-24737122	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:24656400-24658600	Enhancers	Hela-S3	cervix
2	chr11:24657200-24657600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:24657200-24657600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr11:24657200-24658000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr11:24657200-24658400	Enhancers	NHEK	skin
6	chr11:24657200-24659600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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