Variant report

Variant	rs12290860
Chromosome Location	chr11:92712178-92712179
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11020125	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11020126	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12272268	1.00[CEU][hapmap];1.00[GIH][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12275765	0.96[EUR][1000 genomes]
rs12277904	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12283180	0.96[EUR][1000 genomes]
rs12292400	1.00[CEU][hapmap];0.91[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs271042	0.96[EUR][1000 genomes]
rs55985911	1.00[EUR][1000 genomes]
rs61747139	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6483208	1.00[CEU][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs6483209	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6483210	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7127128	1.00[CEU][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7130424	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044571	chr11:92495213-92742314	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv555903	chr11:92640787-92877533	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv555904	chr11:92640787-92881933	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:92710600-92714000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:92710800-92713200	Enhancers	Fetal Muscle Leg	muscle
3	chr11:92711000-92713400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr11:92711200-92712200	Enhancers	Fetal Brain Male	brain
5	chr11:92711200-92713000	Enhancers	Brain Germinal Matrix	brain
6	chr11:92711400-92712200	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr11:92711400-92712600	Enhancers	Brain Cingulate Gyrus	brain
8	chr11:92711400-92713400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr11:92711400-92713800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:92711400-92714000	Enhancers	HMEC	breast
11	chr11:92711600-92712200	Enhancers	Brain Angular Gyrus	brain
12	chr11:92711600-92712200	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr11:92711600-92712400	Enhancers	Fetal Brain Female	brain
14	chr11:92711600-92712600	Enhancers	Brain Hippocampus Middle	brain
15	chr11:92711600-92712600	Enhancers	Brain Substantia Nigra	brain
16	chr11:92711600-92712800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr11:92711600-92712800	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr11:92711600-92712800	Enhancers	HSMM	muscle
19	chr11:92711600-92713000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr11:92711600-92713000	Enhancers	Muscle Satellite Cultured Cells	--
21	chr11:92711600-92713200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr11:92711600-92713400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr11:92711600-92713400	Enhancers	Osteobl	bone
24	chr11:92711800-92712400	Flanking Active TSS	NHEK	skin
25	chr11:92711800-92712600	Enhancers	NHLF	lung
26	chr11:92711800-92713000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr11:92711800-92714000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr11:92712000-92712200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr11:92712000-92712800	Enhancers	HSMMtube	muscle
30	chr11:92712000-92712800	Enhancers	NH-A	brain
31	chr11:92712000-92713000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr11:92712000-92713200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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