Variant report

Variant	rs12292135
Chromosome Location	chr11:32470304-32470305
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10835911	0.87[ASN][1000 genomes]
rs10835916	0.82[ASN][1000 genomes]
rs11031791	0.87[ASN][1000 genomes]
rs11031792	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11031793	0.87[ASN][1000 genomes]
rs12270749	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3858454	0.87[ASN][1000 genomes]
rs3858455	0.87[ASN][1000 genomes]
rs3858456	0.87[ASN][1000 genomes]
rs3930317	0.87[ASN][1000 genomes]
rs4275604	0.87[ASN][1000 genomes]
rs4304749	0.86[ASN][1000 genomes]
rs4980793	0.87[ASN][1000 genomes]
rs7103000	0.87[ASN][1000 genomes]
rs7395210	0.89[ASN][1000 genomes]
rs7948813	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832108	chr11:32395937-32560583	Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2753303	chr11:32447324-32494924	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32468800-32471400	Enhancers	K562	blood
2	chr11:32469000-32487800	Weak transcription	Ovary	ovary
3	chr11:32470000-32470400	Enhancers	HepG2	liver
4	chr11:32470200-32470400	Enhancers	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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