Variant report

Variant	rs12292172
Chromosome Location	chr11:16390093-16390094
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1000565	1.00[CEU][hapmap]
rs1039508	1.00[CEU][hapmap]
rs11603071	0.95[CEU][hapmap]
rs12790582	0.95[CEU][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12805370	0.95[CEU][hapmap]
rs1370465	0.95[CEU][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1503452	1.00[CEU][hapmap]
rs1847315	1.00[CEU][hapmap]
rs35503644	0.82[EUR][1000 genomes]
rs66705712	0.82[EUR][1000 genomes]
rs66906527	0.82[EUR][1000 genomes]
rs67280587	0.82[EUR][1000 genomes]
rs7930085	1.00[CEU][hapmap]
rs7932807	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7945099	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7946119	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16385000-16390200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:16387800-16392000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr11:16388000-16391400	Weak transcription	K562	blood
4	chr11:16388200-16397000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr11:16388200-16414200	Weak transcription	Fetal Intestine Small	intestine
6	chr11:16389200-16397800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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