Variant report

Variant	rs12292530
Chromosome Location	chr11:34919433-34919434
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11032915	0.84[AFR][1000 genomes]
rs12283435	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832119	chr11:34815528-35009370	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv8807	chr11:34912167-34930289	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv2757436	chr11:34913315-34963728	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	13 gene(s)	inside rSNPs	diseases
5	esv2759817	chr11:34913315-34963728	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	13 gene(s)	inside rSNPs	diseases
6	esv34511	chr11:34914124-34942836	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
7	esv2756165	chr11:34914137-34942836	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34882000-34919800	Weak transcription	Left Ventricle	heart
2	chr11:34893000-34921400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr11:34895000-34921200	Weak transcription	Right Ventricle	heart
4	chr11:34898200-34926800	Weak transcription	HSMMtube	muscle
5	chr11:34900200-34921000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:34901400-34920800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:34902000-34921600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr11:34908400-34921200	Weak transcription	Aorta	Aorta
9	chr11:34908800-34921000	Weak transcription	Ovary	ovary
10	chr11:34909800-34921600	Weak transcription	Stomach Mucosa	stomach
11	chr11:34913400-34920800	Weak transcription	A549	lung
12	chr11:34913400-34921200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:34913600-34920800	Weak transcription	HepG2	liver
14	chr11:34913600-34929800	Weak transcription	K562	blood
15	chr11:34917600-34931000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr11:34917800-34919800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
17	chr11:34917800-34925000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr11:34918000-34926200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr11:34918200-34919800	ZNF genes & repeats	Primary B cells from cord blood	blood
20	chr11:34918200-34920200	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
21	chr11:34918200-34923800	ZNF genes & repeats	Primary T cells from cord blood	blood
22	chr11:34918200-34923800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
23	chr11:34918200-34924600	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
24	chr11:34918200-34925800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr11:34918200-34928600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
26	chr11:34919200-34920000	ZNF genes & repeats	Fetal Heart	heart
27	chr11:34919200-34920400	ZNF genes & repeats	Fetal Stomach	stomach
28	chr11:34919200-34923200	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr11:34919200-34923600	ZNF genes & repeats	Liver	Liver
30	chr11:34919200-34923800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
31	chr11:34919200-34924400	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
32	chr11:34919200-34924800	ZNF genes & repeats	Fetal Intestine Small	intestine
33	chr11:34919400-34919600	ZNF genes & repeats	Lung	lung
34	chr11:34919400-34920200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr11:34919400-34923600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr11:34919400-34925200	ZNF genes & repeats	Thymus	Thymus

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