Variant report

Variant	rs12292807
Chromosome Location	chr11:119346693-119346694
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:119338931..119342259-chr11:119346107..119349803,3	K562	blood:
2	chr11:119252341..119254091-chr11:119344729..119346901,2	K562	blood:
3	chr11:119344891..119347210-chr11:119349502..119351029,2	MCF-7	breast:
4	chr11:119187492..119189176-chr11:119345752..119348208,2	K562	blood:
5	chr11:119341330..119343728-chr11:119345375..119347336,2	MCF-7	breast:
6	chr11:119227301..119229062-chr11:119346080..119347995,2	K562	blood:

Variant related genes	Relation type
ENSG00000036672	Chromatin interaction
ENSG00000245248	Chromatin interaction
ENSG00000076706	Chromatin interaction

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10437687	1.00[ASN][1000 genomes]
rs10437688	1.00[ASN][1000 genomes]
rs10437689	1.00[ASN][1000 genomes]
rs10892367	1.00[ASN][1000 genomes]
rs10892368	1.00[ASN][1000 genomes]
rs10892369	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11217268	1.00[ASN][1000 genomes]
rs11217269	1.00[ASN][1000 genomes]
rs11217270	1.00[ASN][1000 genomes]
rs11217271	1.00[ASN][1000 genomes]
rs11217274	1.00[ASN][1000 genomes]
rs11217276	1.00[ASN][1000 genomes]
rs11217278	1.00[ASN][1000 genomes]
rs11217285	1.00[ASN][1000 genomes]
rs11217286	1.00[ASN][1000 genomes]
rs11217287	1.00[ASN][1000 genomes]
rs11217291	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11217292	1.00[ASN][1000 genomes]
rs11217293	1.00[ASN][1000 genomes]
rs11217294	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11217295	1.00[ASN][1000 genomes]
rs11217296	1.00[ASN][1000 genomes]
rs11501130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12099083	1.00[ASN][1000 genomes]
rs12270420	1.00[ASN][1000 genomes]
rs12270772	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12272064	1.00[ASN][1000 genomes]
rs12272461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12272564	1.00[ASN][1000 genomes]
rs12275103	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12276081	1.00[ASN][1000 genomes]
rs12277149	1.00[ASN][1000 genomes]
rs12277164	1.00[ASN][1000 genomes]
rs12277306	1.00[ASN][1000 genomes]
rs12277393	1.00[ASN][1000 genomes]
rs12277398	1.00[ASN][1000 genomes]
rs12277465	1.00[ASN][1000 genomes]
rs12277724	1.00[ASN][1000 genomes]
rs12277774	1.00[ASN][1000 genomes]
rs12278799	1.00[ASN][1000 genomes]
rs12278999	1.00[ASN][1000 genomes]
rs12282662	1.00[ASN][1000 genomes]
rs12283036	1.00[ASN][1000 genomes]
rs12283638	1.00[ASN][1000 genomes]
rs12284021	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12284443	1.00[ASN][1000 genomes]
rs12284865	1.00[ASN][1000 genomes]
rs12286188	1.00[ASN][1000 genomes]
rs12286398	1.00[ASN][1000 genomes]
rs12287835	1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs12289538	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12289668	1.00[ASN][1000 genomes]
rs12291488	1.00[ASN][1000 genomes]
rs12291644	1.00[ASN][1000 genomes]
rs12292111	1.00[ASN][1000 genomes]
rs12292868	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12293448	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12294385	1.00[ASN][1000 genomes]
rs12295486	1.00[ASN][1000 genomes]
rs4409839	1.00[ASN][1000 genomes]
rs4529883	1.00[ASN][1000 genomes]
rs633992	1.00[ASN][1000 genomes]
rs6589738	1.00[ASN][1000 genomes]
rs6589739	1.00[ASN][1000 genomes]
rs6589745	1.00[ASN][1000 genomes]
rs7112938	1.00[ASN][1000 genomes]
rs7127879	1.00[ASN][1000 genomes]
rs7129910	1.00[ASN][1000 genomes]
rs7131030	1.00[ASN][1000 genomes]
rs7131297	1.00[ASN][1000 genomes]
rs7131564	1.00[ASN][1000 genomes]
rs73572187	1.00[ASN][1000 genomes]
rs7929607	1.00[ASN][1000 genomes]
rs7929782	1.00[ASN][1000 genomes]
rs7932485	1.00[ASN][1000 genomes]
rs7936384	1.00[ASN][1000 genomes]
rs7936871	1.00[ASN][1000 genomes]
rs7939887	1.00[ASN][1000 genomes]
rs7946287	1.00[ASN][1000 genomes]
rs7947071	1.00[ASN][1000 genomes]
rs7949777	1.00[ASN][1000 genomes]
rs9651689	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832284	chr11:119237650-119408625	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv1054222	chr11:119295063-119406369	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv1831688	chr11:119346590-119387267	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119337800-119359600	Weak transcription	Right Atrium	heart
2	chr11:119345200-119346800	Enhancers	NHDF-Ad	bronchial
3	chr11:119345400-119347600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:119345600-119346800	Enhancers	NHLF	lung
5	chr11:119346000-119347600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr11:119346400-119346800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:119346400-119347200	Enhancers	Hela-S3	cervix
8	chr11:119346600-119350200	Weak transcription	K562	blood

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