Variant report

Variant	rs12293368
Chromosome Location	chr11:86136464-86136465
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12284932	1.00[AMR][1000 genomes]
rs12291394	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17149045	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86108600-86138600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:86117800-86142200	Weak transcription	Fetal Stomach	stomach
3	chr11:86118200-86151000	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr11:86118400-86142800	Weak transcription	Left Ventricle	heart
5	chr11:86119600-86142200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:86123600-86136800	Weak transcription	Brain Hippocampus Middle	brain
7	chr11:86124600-86142200	Weak transcription	Aorta	Aorta
8	chr11:86124800-86136600	Weak transcription	Brain Anterior Caudate	brain
9	chr11:86131400-86142400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr11:86132200-86142200	Weak transcription	Spleen	Spleen
11	chr11:86134800-86136600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr11:86136200-86143600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr11:86136200-86145000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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