Variant report

Variant	rs12294929
Chromosome Location	chr11:15816234-15816235
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10219159	1.00[AMR][1000 genomes]
rs11023725	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11023726	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12270818	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12272438	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051187	chr11:15781277-15846536	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv2760185	chr11:15808636-15816484	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15813800-15828800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:15814000-15816400	Enhancers	Muscle Satellite Cultured Cells	--
3	chr11:15814000-15816400	Enhancers	Osteobl	bone
4	chr11:15814000-15816600	Enhancers	NH-A	brain
5	chr11:15814600-15817400	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr11:15814800-15816400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:15814800-15816400	Enhancers	HSMM	muscle
8	chr11:15815800-15821200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr11:15816000-15816400	Weak transcription	Psoas Muscle	Psoas
10	chr11:15816000-15816600	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr11:15816200-15820800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr11:15816200-15821400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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