Variant report
| Variant | rs1229534 |
|---|---|
| Chromosome Location | chr7:97464975-97464976 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:7)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:7 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:95545911..95546494-chr7:97464582..97465559,3 | K562 | blood: | |
| 2 | chr7:97128179..97129179-chr7:97464746..97465556,3 | MCF-7 | breast: | |
| 3 | chr7:97128692..97129417-chr7:97464626..97465345,2 | MCF-7 | breast: | |
| 4 | chr7:96733650..96734674-chr7:97464552..97465561,7 | K562 | blood: | |
| 5 | chr7:96774093..96774664-chr7:97464582..97465159,2 | MCF-7 | breast: | |
| 6 | chr7:97464795..97465461-chr7:97557301..97558244,2 | K562 | blood: | |
| 7 | chr7:96774113..96775121-chr7:97464719..97465350,5 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs10231594 | 0.94[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs1229535 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1229538 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1229564 | 0.81[ASN][1000 genomes] |
| rs1234947 | 0.81[ASN][1000 genomes] |
| rs1237625 | 0.81[ASN][1000 genomes] |
| rs1848856 | 0.80[EUR][1000 genomes] |
| rs2457586 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2530122 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2530123 | 0.83[CHD][hapmap];0.85[JPT][hapmap] |
| rs2665438 | 0.81[ASN][1000 genomes] |
| rs4634561 | 0.82[CHB][hapmap] |
| rs4727377 | 0.82[CHB][hapmap] |
| rs6959868 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6969821 | 0.82[CHB][hapmap] |
| rs6971012 | 1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs73140932 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1031371 | chr7:97312452-98070538 | Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 42 gene(s) | inside rSNPs | diseases |
| 2 | nsv428178 | chr7:97402756-97648029 | Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:97462400-97465000 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
