Variant report

Variant	rs12295590
Chromosome Location	chr11:102700694-102700695
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr11:102700562-102700826	HepG2	liver:	n/a	chr11:102700682-102700698 chr11:102700682-102700697 chr11:102700687-102700698
2	STAT1	chr11:102700300-102700747	Hela-S3	cervix:	n/a	chr11:102700501-102700512
3	MAFK	chr11:102700544-102700770	HepG2	liver:	n/a	chr11:102700682-102700698 chr11:102700682-102700697 chr11:102700687-102700698
4	MAFF	chr11:102700620-102700745	HepG2	liver:	n/a	chr11:102700681-102700699
5	MAFK	chr11:102700657-102700834	IMR90	lung:	n/a	chr11:102700682-102700698 chr11:102700682-102700697 chr11:102700687-102700698

Variant related genes	Relation type
WTAPP1	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11225429	0.82[LWK][hapmap]
rs1892875	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs7129555	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898335	chr11:102682285-102866158	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv3367703	chr11:102698642-102700890	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102690800-102700800	Weak transcription	Stomach Mucosa	stomach
2	chr11:102697200-102701400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:102699800-102701000	Enhancers	Adipose Nuclei	Adipose
4	chr11:102700000-102700800	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr11:102700000-102700800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr11:102700000-102700800	Enhancers	Brain Germinal Matrix	brain
7	chr11:102700000-102701000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr11:102700000-102701400	Enhancers	HMEC	breast
9	chr11:102700000-102701600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr11:102700000-102702200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:102700000-102702200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr11:102700200-102700800	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr11:102700200-102701000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr11:102700200-102701400	Enhancers	NHDF-Ad	bronchial
15	chr11:102700200-102701600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr11:102700400-102700800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr11:102700400-102700800	Enhancers	Fetal Brain Male	brain
18	chr11:102700600-102701000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr11:102700600-102701200	Flanking Active TSS	NHEK	skin
20	chr11:102700600-102701400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr11:102700600-102701400	Weak transcription	Placenta	Placenta
22	chr11:102700600-102702400	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr11:102700600-102702600	Weak transcription	Right Atrium	heart
24	chr11:102700600-102707200	Weak transcription	H9 Cell Line	embryonic stem cell

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