Variant report

Variant	rs12295797
Chromosome Location	chr11:94304270-94304271
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:94296758..94299631-chr11:94304170..94305829,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1105465	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.92[MKK][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16912568	1.00[CHB][hapmap];0.92[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.92[MKK][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16920648	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[ASN][1000 genomes]
rs2186623	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.86[MKK][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2230274	1.00[CEU][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4256938	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4753608	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs60712417	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60780460	0.88[ASN][1000 genomes]
rs61065511	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs624184	1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[MEX][hapmap];0.81[MKK][hapmap]
rs692863	1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7102055	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94281000-94319200	Weak transcription	Aorta	Aorta
2	chr11:94282200-94317400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr11:94282200-94322600	Weak transcription	Brain Anterior Caudate	brain
4	chr11:94282600-94322200	Weak transcription	Fetal Stomach	stomach
5	chr11:94284000-94323400	Weak transcription	Fetal Muscle Leg	muscle
6	chr11:94291800-94322000	Weak transcription	Colon Smooth Muscle	Colon
7	chr11:94293000-94322400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr11:94293600-94322400	Weak transcription	Gastric	stomach
9	chr11:94296600-94307800	Weak transcription	Right Atrium	heart
10	chr11:94296600-94344800	Weak transcription	Left Ventricle	heart
11	chr11:94297200-94307400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr11:94297200-94307400	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr11:94297200-94322200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr11:94297400-94310000	Weak transcription	Duodenum Mucosa	Duodenum
15	chr11:94298200-94307000	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr11:94298400-94307400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr11:94299800-94307400	Weak transcription	Primary hematopoietic stem cells	blood
18	chr11:94300800-94306000	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr11:94300800-94307600	Weak transcription	Fetal Intestine Large	intestine
20	chr11:94301600-94307200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:94302200-94306000	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr11:94302200-94307400	Weak transcription	K562	blood
23	chr11:94302200-94307600	Weak transcription	Pancreas	Pancrea
24	chr11:94303000-94325400	Weak transcription	Brain Cingulate Gyrus	brain
25	chr11:94303600-94314600	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr11:94303800-94304400	Strong transcription	Fetal Intestine Small	intestine

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