Variant report

Variant	rs12296041
Chromosome Location	chr11:57278651-57278652
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:57265680..57269520-chr11:57278275..57283954,6	K562	blood:

Variant related genes	Relation type
ENSG00000149150	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11229044	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12275916	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4939146	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4939147	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59972624	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61886993	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6591429	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7933797	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7934626	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv530621	chr11:57139699-57703639	Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57251200-57280600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr11:57251400-57279200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr11:57251400-57281200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr11:57253800-57279000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr11:57257400-57281400	Weak transcription	Primary T cells from cord blood	blood
6	chr11:57258800-57279200	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr11:57259200-57279000	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr11:57259200-57280800	Weak transcription	GM12878-XiMat	blood
9	chr11:57261400-57281400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr11:57261800-57279600	Weak transcription	Dnd41	blood
11	chr11:57267200-57279400	Weak transcription	Primary B cells from peripheral blood	blood
12	chr11:57267600-57280200	Weak transcription	Primary B cells from cord blood	blood
13	chr11:57267600-57281200	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr11:57267600-57281600	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr11:57267800-57280600	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr11:57267800-57281400	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr11:57267800-57281400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr11:57267800-57281400	Weak transcription	Rectal Smooth Muscle	rectum
19	chr11:57267800-57281600	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr11:57267800-57281600	Weak transcription	NH-A	brain
21	chr11:57267800-57281800	Weak transcription	Aorta	Aorta
22	chr11:57268000-57279600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr11:57268000-57281000	Weak transcription	Brain Cingulate Gyrus	brain
24	chr11:57268000-57281800	Weak transcription	Small Intestine	intestine
25	chr11:57268200-57280000	Weak transcription	Colon Smooth Muscle	Colon
26	chr11:57268200-57280400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr11:57268200-57280800	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr11:57268200-57281600	Weak transcription	Brain Angular Gyrus	brain
29	chr11:57268400-57281800	Weak transcription	Fetal Lung	lung
30	chr11:57268600-57280400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr11:57268600-57280800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr11:57268600-57280800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr11:57268600-57281800	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr11:57268800-57280200	Weak transcription	NHLF	lung
35	chr11:57268800-57281200	Weak transcription	Lung	lung
36	chr11:57268800-57281600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr11:57269000-57279200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr11:57269000-57280200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr11:57269000-57281400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr11:57269000-57281400	Weak transcription	Left Ventricle	heart
41	chr11:57269800-57280600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr11:57269800-57281200	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr11:57269800-57281400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr11:57270000-57280600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr11:57270000-57281000	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr11:57270000-57281400	Weak transcription	Primary monocytes fromperipheralblood	blood
47	chr11:57270200-57280200	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr11:57270200-57281200	Weak transcription	Gastric	stomach
49	chr11:57270200-57281400	Weak transcription	Right Ventricle	heart
50	chr11:57270200-57281400	Weak transcription	Spleen	Spleen

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