Variant report

Variant	rs12296768
Chromosome Location	chr12:8970079-8970080
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:8849666..8851674-chr12:8967931..8970598,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166532	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10161484	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10771078	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10771079	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10842334	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10842335	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11047362	0.81[EUR][1000 genomes]
rs2377590	0.84[ASN][1000 genomes]
rs2377591	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:8960000-8972000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:8963000-8970200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr12:8966800-8975600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr12:8967000-8972000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr12:8967000-8975000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr12:8967200-8971800	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr12:8967200-8972000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr12:8967400-8971400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr12:8967800-8974000	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr12:8968200-8972000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr12:8968600-8970800	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr12:8969000-8970400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr12:8969400-8970800	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr12:8969600-8970200	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr12:8969800-8970400	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr12:8969800-8970600	Enhancers	H1 Cell Line	embryonic stem cell
17	chr12:8969800-8970600	Enhancers	Esophagus	oesophagus
18	chr12:8969800-8970600	Enhancers	Placenta Amnion	Placenta Amnion
19	chr12:8969800-8975600	Enhancers	Placenta	Placenta
20	chr12:8970000-8970800	Enhancers	K562	blood
21	chr12:8970000-8972400	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr12:8970000-8972400	Weak transcription	Primary hematopoietic stem cells	blood

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