Variant report

Variant	rs12296967
Chromosome Location	chr12:41041731-41041732
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10161509	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748148	0.82[JPT][hapmap]
rs11177582	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11177589	0.99[ASN][1000 genomes]
rs1584094	0.83[JPT][hapmap]
rs1918951	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1918953	0.93[ASN][1000 genomes]
rs2405290	1.00[ASN][1000 genomes]
rs3940638	0.81[ASN][1000 genomes]
rs73267740	0.80[ASN][1000 genomes]
rs935224	0.82[JPT][hapmap]
rs9669757	0.84[JPT][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899033	chr12:40758652-41122288	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv832378	chr12:40943111-41132305	Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41037000-41041800	Enhancers	Fetal Lung	lung
2	chr12:41040600-41042000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr12:41040800-41041800	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr12:41040800-41042800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr12:41040800-41044000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr12:41040800-41044400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr12:41041000-41042000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr12:41041000-41043600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr12:41041200-41041800	Enhancers	NHEK	skin
10	chr12:41041200-41042000	Flanking Active TSS	A549	lung
11	chr12:41041200-41042600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr12:41041400-41042600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr12:41041600-41041800	Enhancers	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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