Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:119891011..119892854-chr12:119894450..119896303,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CIT-8	chr12:119892024-119894478	l_742_NR_024345

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11064793	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12303615	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12305024	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12322638	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1880985	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2519543	0.87[CHB][hapmap]
rs2727741	0.87[CHB][hapmap];0.92[JPT][hapmap]
rs477467	0.87[CHB][hapmap];0.83[JPT][hapmap]
rs482802	0.83[JPT][hapmap]
rs487818	0.87[CHB][hapmap];0.83[JPT][hapmap]
rs518202	0.87[CHB][hapmap];0.83[JPT][hapmap]
rs520809	0.87[CHB][hapmap]
rs529501	0.87[CHB][hapmap];0.83[JPT][hapmap]
rs560785	0.89[CHB][hapmap];0.83[JPT][hapmap]
rs56105768	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56211979	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67884573	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73217290	0.96[ASN][1000 genomes]
rs7968484	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7971941	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs953693	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047036	chr12:119477583-119992640	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv916688	chr12:119801814-120044407	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv832529	chr12:119863378-120071646	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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