Variant report

Variant	rs12298898
Chromosome Location	chr12:120817262-120817263
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1184532	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs206948	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs206949	0.85[ASN][1000 genomes]
rs206952	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2951690	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4767890	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899555	chr12:120519124-120840522	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	499 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120813800-120819200	Weak transcription	Fetal Intestine Small	intestine
2	chr12:120814000-120819200	Weak transcription	Hela-S3	cervix
3	chr12:120814600-120819200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr12:120815400-120818200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr12:120815600-120819600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr12:120815600-120825800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr12:120815800-120817800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr12:120815800-120819800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr12:120816400-120817800	Weak transcription	K562	blood
10	chr12:120816400-120819200	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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