Variant report

Variant	rs12298946
Chromosome Location	chr12:10025342-10025343
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr12:10025246-10025415	MCF10A-Er-Src	breast:	n/a	n/a
2	MYC	chr12:10025285-10025686	MCF10A-Er-Src	breast:	n/a	n/a
3	MYC	chr12:10025293-10025778	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:10024279..10026522-chr12:10046207..10048850,2	K562	blood:
2	chr12:10024036..10026643-chr12:10029276..10031174,3	K562	blood:

Variant related genes	Relation type
CLEC2B	TF binding region

rs_ID	r²[population]
rs11053492	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10023200-10025400	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr12:10023400-10025600	Enhancers	Primary hematopoietic stem cells	blood
3	chr12:10024000-10025400	Enhancers	Adipose Nuclei	Adipose
4	chr12:10024200-10025400	Flanking Active TSS	NHEK	skin
5	chr12:10024200-10025600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr12:10024200-10026200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr12:10024400-10026200	Enhancers	HMEC	breast
8	chr12:10024800-10025600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr12:10024800-10025600	Active TSS	Skeletal Muscle Male	skeletal muscle
10	chr12:10025000-10025400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr12:10025000-10025600	Enhancers	Right Ventricle	heart
12	chr12:10025000-10025600	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr12:10025200-10025400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr12:10025200-10025600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr12:10025200-10025600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr12:10025200-10025600	Enhancers	Fetal Muscle Trunk	muscle
17	chr12:10025200-10025600	Enhancers	Fetal Muscle Leg	muscle
18	chr12:10025200-10025600	Enhancers	Placenta	Placenta
19	chr12:10025200-10025800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr12:10025200-10025800	Enhancers	Esophagus	oesophagus

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