Variant report

Variant	rs12299377
Chromosome Location	chr12:26164981-26164982
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:120186887..120187680-chr12:26164735..26165561,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11048341	0.83[AFR][1000 genomes]
rs12296573	0.83[AFR][1000 genomes]
rs12297843	1.00[AFR][1000 genomes]
rs12311346	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898931	chr12:26123345-26192936	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26160600-26167000	Weak transcription	Gastric	stomach
2	chr12:26160600-26168000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr12:26160600-26168200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr12:26160600-26168200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr12:26160600-26168200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr12:26160600-26170400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr12:26160600-26170600	Weak transcription	Fetal Intestine Small	intestine
8	chr12:26160600-26171600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr12:26161600-26167400	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr12:26161800-26165000	Enhancers	Colon Smooth Muscle	Colon
11	chr12:26162400-26165000	Enhancers	HUVEC	blood vessel
12	chr12:26162600-26165200	Enhancers	Muscle Satellite Cultured Cells	--
13	chr12:26163200-26165200	Enhancers	NHDF-Ad	bronchial
14	chr12:26163400-26168200	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr12:26163600-26166800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr12:26163600-26167000	Weak transcription	Esophagus	oesophagus
17	chr12:26163600-26170400	Weak transcription	Pancreas	Pancrea
18	chr12:26163800-26168200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr12:26163800-26168200	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr12:26164000-26165200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr12:26164000-26168000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr12:26164200-26167000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr12:26164200-26167000	Weak transcription	Fetal Heart	heart
24	chr12:26164200-26168200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr12:26164200-26168200	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr12:26164200-26168200	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr12:26164200-26170400	Weak transcription	Brain Angular Gyrus	brain
28	chr12:26164400-26168200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr12:26164400-26170400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr12:26164600-26165000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr12:26164600-26165400	Enhancers	Osteobl	bone
32	chr12:26164600-26165800	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr12:26164600-26166800	Weak transcription	Brain Substantia Nigra	brain
34	chr12:26164600-26167000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr12:26164600-26170200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr12:26164600-26170400	Weak transcription	Brain Anterior Caudate	brain
37	chr12:26164600-26171600	Weak transcription	NH-A	brain
38	chr12:26164800-26165000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr12:26164800-26165800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr12:26164800-26165800	Weak transcription	Right Atrium	heart
41	chr12:26164800-26166000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr12:26164800-26166000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr12:26164800-26166000	Weak transcription	Brain Cingulate Gyrus	brain
44	chr12:26164800-26166000	Weak transcription	Brain Hippocampus Middle	brain
45	chr12:26164800-26166200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr12:26164800-26166800	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr12:26164800-26167000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr12:26164800-26167000	Weak transcription	Rectal Smooth Muscle	rectum
49	chr12:26164800-26167000	Weak transcription	Right Ventricle	heart
50	chr12:26164800-26168400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links