Variant report

Variant	rs12299378
Chromosome Location	chr12:29157002-29157003
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs11050001	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11050015	1.00[EUR][1000 genomes]
rs11050022	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11050023	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11050031	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11050102	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11050109	1.00[CEU][hapmap]
rs12299296	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12302693	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12305640	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12305958	1.00[EUR][1000 genomes]
rs12306317	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12308307	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12309725	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12311253	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12314772	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12315253	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12315255	1.00[EUR][1000 genomes]
rs12316813	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12318343	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12319491	1.00[EUR][1000 genomes]
rs12322477	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56235020	1.00[EUR][1000 genomes]
rs59858313	1.00[EUR][1000 genomes]
rs73061729	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73061748	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73063778	1.00[EUR][1000 genomes]
rs73063781	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73063782	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73063783	1.00[EUR][1000 genomes]
rs73065614	1.00[EUR][1000 genomes]
rs73065622	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73065637	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73067717	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73067752	1.00[EUR][1000 genomes]
rs73068496	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73070471	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73070475	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73070476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73071945	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73071951	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73071976	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73071996	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73072288	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73073756	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73073757	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73073782	1.00[AMR][1000 genomes]
rs73073797	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73073798	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532233	chr12:29009388-29496179	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv995123	chr12:29095272-29571558	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	esv2758301	chr12:29110782-29289849	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2759888	chr12:29110782-29289849	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:29156200-29157600	Weak transcription	Brain Germinal Matrix	brain
2	chr12:29157000-29157200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr12:29157000-29157800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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