Variant report

Variant	rs12301612
Chromosome Location	chr12:47779847-47779848
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12303418	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12306190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55799908	1.00[AMR][1000 genomes]
rs56398760	1.00[AMR][1000 genomes]
rs73297599	1.00[AMR][1000 genomes]
rs74084707	1.00[AMR][1000 genomes]
rs74084709	1.00[AMR][1000 genomes]
rs74084924	1.00[AMR][1000 genomes]
rs74084925	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv558785	chr12:47740440-48044011	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:47771600-47786800	Weak transcription	Fetal Brain Male	brain
2	chr12:47773400-47781600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr12:47773400-47784400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr12:47777800-47784400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr12:47778000-47783000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr12:47778000-47790600	Weak transcription	Right Atrium	heart
7	chr12:47778200-47784400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr12:47778800-47786400	Weak transcription	HUVEC	blood vessel
9	chr12:47779000-47782400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr12:47779000-47782600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr12:47779400-47781000	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr12:47779600-47782200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr12:47779600-47782800	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr12:47779600-47784800	Weak transcription	A549	lung
15	chr12:47779800-47782400	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr12:47779800-47782600	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr12:47779800-47782800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr12:47779800-47785800	Weak transcription	Fetal Brain Female	brain
19	chr12:47779800-47786000	Weak transcription	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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