Variant report

Variant	rs12303470
Chromosome Location	chr12:62198085-62198086
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11174196	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12312146	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73308250	1.00[AMR][1000 genomes]
rs73324077	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv899151	chr12:62108648-62227606	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62196800-62198600	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr12:62197000-62198600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr12:62197800-62198200	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr12:62197800-62198600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr12:62197800-62198600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr12:62198000-62198600	Enhancers	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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