Variant report

Variant	rs12304718
Chromosome Location	chr12:7632376-7632377
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11609115	0.86[ASN][1000 genomes]
rs12302881	0.86[ASN][1000 genomes]
rs60773564	0.85[ASN][1000 genomes]
rs73045114	0.84[ASN][1000 genomes]
rs9888308	0.86[ASN][1000 genomes]
rs9888426	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv557269	chr12:7623724-7691134	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs12304718	CLEC4E	cis	parietal	SCAN
rs12304718	EMG1	cis	parietal	SCAN
rs12304718	KCNA6	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:7622200-7637600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr12:7630000-7649400	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr12:7630200-7649200	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr12:7632000-7638600	Weak transcription	Spleen	Spleen

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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