Variant report

Variant	rs12305171
Chromosome Location	chr12:86134509-86134510
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11116979	1.00[AMR][1000 genomes]
rs11116997	1.00[AMR][1000 genomes]
rs11116998	1.00[AMR][1000 genomes]
rs11116999	1.00[AMR][1000 genomes]
rs11117002	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11117008	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11117009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12299851	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12301100	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12301766	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12304340	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12304459	1.00[AMR][1000 genomes]
rs12304781	1.00[AMR][1000 genomes]
rs12307752	1.00[AMR][1000 genomes]
rs12309450	0.83[AFR][1000 genomes]
rs12311207	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12311993	1.00[AMR][1000 genomes]
rs12313240	1.00[AMR][1000 genomes]
rs12316331	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12320575	1.00[AMR][1000 genomes]
rs13377854	1.00[AMR][1000 genomes]
rs7301687	1.00[AMR][1000 genomes]
rs747405	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054573	chr12:85658602-86235433	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1035600	chr12:85661373-86235433	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1052187	chr12:85954455-86278200	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv541560	chr12:85954455-86278200	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1054475	chr12:85985510-86175711	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv541561	chr12:85985510-86175711	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1049179	chr12:86056376-86799188	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv455680	chr12:86120810-86160277	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	n/a	n/a	inside rSNPs	diseases
9	nsv559666	chr12:86120810-86160277	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:86133600-86135600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr12:86134000-86135800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr12:86134000-86136000	Enhancers	Adipose Nuclei	Adipose
4	chr12:86134200-86134600	Enhancers	Fetal Brain Female	brain

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