Variant report

Variant	rs12305186
Chromosome Location	chr12:105293944-105293945
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12296570	0.87[AMR][1000 genomes]
rs12297659	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12315904	0.87[AMR][1000 genomes]
rs12317565	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12319837	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12321666	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12322073	0.87[AMR][1000 genomes]
rs7961764	0.87[AMR][1000 genomes]
rs7980785	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899495	chr12:104990469-105527011	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv899498	chr12:105173598-105461620	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105275400-105297000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr12:105278600-105313800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr12:105284600-105309000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr12:105285000-105296200	Weak transcription	Aorta	Aorta
5	chr12:105290600-105297200	Weak transcription	HepG2	liver
6	chr12:105290800-105295600	Weak transcription	Stomach Mucosa	stomach
7	chr12:105290800-105296400	Weak transcription	Pancreas	Pancrea
8	chr12:105290800-105331600	Weak transcription	Gastric	stomach
9	chr12:105291800-105294400	Weak transcription	Liver	Liver
10	chr12:105292000-105297600	Weak transcription	Colon Smooth Muscle	Colon
11	chr12:105293400-105294400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr12:105293400-105302600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr12:105293400-105310000	Weak transcription	Duodenum Mucosa	Duodenum
14	chr12:105293600-105303800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr12:105293600-105321600	Weak transcription	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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