Variant report

Variant	rs12306141
Chromosome Location	chr12:106465488-106465489
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11112856	1.00[ASN][1000 genomes]
rs11112857	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12815216	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12826780	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36103235	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7133815	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832509	chr12:106363888-106516221	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106452400-106468600	Weak transcription	Psoas Muscle	Psoas
2	chr12:106452800-106472200	Weak transcription	HMEC	breast
3	chr12:106452800-106474000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr12:106456400-106468000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr12:106456600-106468800	Weak transcription	Colonic Mucosa	Colon
6	chr12:106458200-106468600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr12:106458200-106471800	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr12:106458400-106468600	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr12:106458600-106476800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr12:106458800-106500200	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr12:106459200-106466200	Strong transcription	NH-A	brain
12	chr12:106460200-106465800	Strong transcription	Adipose Nuclei	Adipose
13	chr12:106460200-106468600	Weak transcription	Duodenum Mucosa	Duodenum
14	chr12:106460400-106466200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr12:106460400-106466200	Strong transcription	HSMM	muscle
16	chr12:106460400-106466400	Weak transcription	Right Atrium	heart
17	chr12:106461400-106467200	Strong transcription	HUVEC	blood vessel
18	chr12:106461600-106466200	Weak transcription	NHLF	lung
19	chr12:106461600-106468000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr12:106461800-106468200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr12:106461800-106499600	Weak transcription	Fetal Intestine Large	intestine
22	chr12:106462000-106468600	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr12:106462400-106466600	Weak transcription	Gastric	stomach
24	chr12:106462400-106467000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr12:106462400-106468400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr12:106462400-106468400	Weak transcription	Fetal Intestine Small	intestine
27	chr12:106462400-106468600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr12:106462400-106482600	Weak transcription	Esophagus	oesophagus
29	chr12:106462600-106466400	Weak transcription	Placenta	Placenta
30	chr12:106462600-106477400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr12:106462800-106468400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr12:106462800-106477400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr12:106463200-106465800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr12:106463600-106470800	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr12:106463800-106477600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr12:106464000-106466600	Weak transcription	Rectal Smooth Muscle	rectum
37	chr12:106464000-106468400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr12:106464000-106468400	Weak transcription	Pancreas	Pancrea
39	chr12:106464000-106470200	Weak transcription	Lung	lung
40	chr12:106464200-106468200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr12:106464400-106468600	Weak transcription	Fetal Brain Male	brain
42	chr12:106464600-106467200	Enhancers	Stomach Smooth Muscle	stomach
43	chr12:106464600-106467600	Enhancers	Fetal Heart	heart
44	chr12:106464600-106467800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr12:106464600-106468400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr12:106464600-106468400	Weak transcription	Aorta	Aorta
47	chr12:106464600-106477400	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr12:106464800-106466000	Enhancers	Liver	Liver
49	chr12:106464800-106466400	Weak transcription	Right Ventricle	heart
50	chr12:106464800-106466600	Weak transcription	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links