Variant report

Variant	rs12306961
Chromosome Location	chr12:30912537-30912538
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:30910867..30913855-chr12:30915625..30917760,2	MCF-7	breast:
2	chr12:30910152..30913762-chr12:30918639..30921470,3	MCF-7	breast:
3	chr12:30646656..30649637-chr12:30912418..30914854,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10743725	0.82[ASN][1000 genomes]
rs10843794	0.82[ASN][1000 genomes]
rs10843797	0.82[ASN][1000 genomes]
rs10843798	0.82[ASN][1000 genomes]
rs10843805	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11051009	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11051023	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11051026	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11051030	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11051034	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11051044	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11051046	1.00[ASN][1000 genomes]
rs11610452	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12308822	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12310942	1.00[ASN][1000 genomes]
rs12371883	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12372023	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2099028	1.00[ASN][1000 genomes]
rs3906774	0.82[ASN][1000 genomes]
rs59483134	0.85[ASN][1000 genomes]
rs6487924	0.82[ASN][1000 genomes]
rs6487929	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6487931	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7135005	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7302606	0.81[EUR][1000 genomes]
rs7302757	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7303665	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7306125	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7307432	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7308638	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7310127	0.80[EUR][1000 genomes]
rs7315859	0.88[ASN][1000 genomes]
rs73292874	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs74083892	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7963438	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7963524	0.94[ASN][1000 genomes]
rs7968669	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7968760	0.82[ASN][1000 genomes]
rs9651844	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3343291	chr12:30455597-30992837	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv832361	chr12:30794030-30997241	Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv949148	chr12:30800040-31131712	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:30908800-30915200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr12:30909200-30914800	Weak transcription	HepG2	liver
3	chr12:30909600-30915800	Weak transcription	Pancreas	Pancrea

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