Variant report

Variant	rs12306965
Chromosome Location	chr12:106326739-106326740
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:106252103..106254778-chr12:106324324..106327304,2	MCF-7	breast:
2	chr12:106290453..106292441-chr12:106325256..106328012,2	MCF-7	breast:
3	chr12:106319277..106321862-chr12:106325653..106327351,2	MCF-7	breast:
4	chr12:106326499..106332666-chr12:106530301..106534417,9	MCF-7	breast:
5	chr12:106252576..106257330-chr12:106324880..106330173,10	MCF-7	breast:
6	chr12:106325602..106327976-chr12:106491240..106494183,2	MCF-7	breast:
7	chr12:106322923..106333063-chr12:106528610..106534226,20	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000074590	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1078862	1.00[EUR][1000 genomes]
rs1078863	1.00[EUR][1000 genomes]
rs11112797	1.00[EUR][1000 genomes]
rs11112798	1.00[EUR][1000 genomes]
rs11112801	1.00[EUR][1000 genomes]
rs11836913	1.00[EUR][1000 genomes]
rs12305245	1.00[EUR][1000 genomes]
rs12311106	1.00[EUR][1000 genomes]
rs12313233	1.00[EUR][1000 genomes]
rs12315236	1.00[EUR][1000 genomes]
rs12317813	1.00[EUR][1000 genomes]
rs12320402	1.00[EUR][1000 genomes]
rs12321313	1.00[EUR][1000 genomes]
rs35281026	1.00[EUR][1000 genomes]
rs7960898	1.00[EUR][1000 genomes]
rs7962795	1.00[EUR][1000 genomes]
rs7962923	1.00[EUR][1000 genomes]
rs7973916	1.00[EUR][1000 genomes]
rs7976372	1.00[EUR][1000 genomes]
rs7980654	1.00[EUR][1000 genomes]
rs880439	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832508	chr12:106198797-106409112	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106317000-106327600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr12:106321200-106327600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr12:106322200-106327600	Weak transcription	HSMM	muscle
4	chr12:106323200-106326800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr12:106324400-106327800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr12:106324400-106327800	Enhancers	NHEK	skin
7	chr12:106324600-106327800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr12:106324600-106327800	Weak transcription	Brain Substantia Nigra	brain
9	chr12:106324600-106332000	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr12:106324800-106327600	Weak transcription	Brain Hippocampus Middle	brain
11	chr12:106324800-106327800	Weak transcription	Brain Anterior Caudate	brain
12	chr12:106324800-106332200	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr12:106324800-106332400	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr12:106325000-106327200	Weak transcription	HUVEC	blood vessel
15	chr12:106325000-106327600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr12:106325000-106327600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr12:106325000-106327600	Weak transcription	Psoas Muscle	Psoas
18	chr12:106325000-106327800	Weak transcription	Right Ventricle	heart
19	chr12:106325000-106329000	Weak transcription	Left Ventricle	heart
20	chr12:106325000-106329800	Weak transcription	Right Atrium	heart
21	chr12:106325200-106327600	Weak transcription	A549	lung
22	chr12:106325200-106332400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr12:106325400-106327400	Weak transcription	Hela-S3	cervix
24	chr12:106325400-106327800	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr12:106325400-106336600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr12:106325600-106335200	Enhancers	HMEC	breast
27	chr12:106325800-106326800	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr12:106326200-106327600	Weak transcription	Esophagus	oesophagus
29	chr12:106326200-106327800	Weak transcription	Brain Germinal Matrix	brain
30	chr12:106326400-106327400	Weak transcription	HSMMtube	muscle
31	chr12:106326400-106327600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr12:106326400-106327600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr12:106326400-106327600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr12:106326400-106327600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr12:106326400-106327600	Weak transcription	Fetal Muscle Leg	muscle
36	chr12:106326400-106327600	Weak transcription	Fetal Stomach	stomach
37	chr12:106326400-106327600	Weak transcription	Lung	lung
38	chr12:106326400-106327800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr12:106326400-106327800	Weak transcription	Fetal Lung	lung
40	chr12:106326400-106328200	Weak transcription	Fetal Muscle Trunk	muscle
41	chr12:106326400-106329800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr12:106326400-106330400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr12:106326600-106327000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr12:106326600-106327600	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr12:106326600-106327800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr12:106326600-106330600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links