Variant report

Variant	rs12307804
Chromosome Location	chr12:58675847-58675848
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10877088	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs10877089	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs10877090	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs11172522	0.91[AMR][1000 genomes]
rs11834960	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs12301627	0.89[AMR][1000 genomes]
rs12315044	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs4760196	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs4760379	0.91[AMR][1000 genomes]
rs4760380	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899124	chr12:58391839-58883507	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:58675600-58676600	Weak transcription	Skeletal Muscle Male	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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