Variant report

Variant	rs1231233
Chromosome Location	chr18:25730156-25730157
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1231234	1.00[CEU][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1231238	1.00[CEU][hapmap]
rs1231239	1.00[CEU][hapmap]
rs1639387	1.00[CEU][hapmap]
rs961497	1.00[CEU][hapmap]
rs9958671	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25710600-25731000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr18:25716800-25730400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr18:25717600-25753400	Weak transcription	Dnd41	blood
4	chr18:25724000-25732400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr18:25724000-25732800	Weak transcription	Gastric	stomach
6	chr18:25725000-25731600	Enhancers	Liver	Liver
7	chr18:25725600-25731000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr18:25726000-25739200	Weak transcription	HSMM	muscle
9	chr18:25726000-25745400	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr18:25726800-25731000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr18:25727000-25731000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr18:25727200-25731000	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr18:25727800-25732200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr18:25728000-25731000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr18:25728000-25731400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr18:25728000-25737400	Weak transcription	Fetal Lung	lung
17	chr18:25728200-25732200	Weak transcription	Fetal Brain Male	brain
18	chr18:25728200-25732400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr18:25728200-25739200	Weak transcription	HepG2	liver
20	chr18:25728400-25732000	Enhancers	Right Ventricle	heart
21	chr18:25728600-25730200	Weak transcription	Right Atrium	heart
22	chr18:25728600-25730800	Weak transcription	Brain Cingulate Gyrus	brain
23	chr18:25728600-25731000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr18:25728600-25731000	Weak transcription	Brain Hippocampus Middle	brain
25	chr18:25728600-25731000	Weak transcription	Ovary	ovary
26	chr18:25728800-25730200	Weak transcription	Brain Substantia Nigra	brain
27	chr18:25728800-25730400	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr18:25728800-25731000	Weak transcription	Brain Angular Gyrus	brain
29	chr18:25728800-25731000	Weak transcription	Brain Anterior Caudate	brain
30	chr18:25728800-25731000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr18:25728800-25731400	Weak transcription	NH-A	brain
32	chr18:25728800-25732800	Weak transcription	Osteobl	bone
33	chr18:25728800-25754200	Weak transcription	HUVEC	blood vessel
34	chr18:25729200-25730200	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr18:25729200-25730400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr18:25729200-25731000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr18:25729200-25731600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr18:25729200-25731600	Weak transcription	Fetal Brain Female	brain
39	chr18:25729200-25732000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
40	chr18:25729200-25732400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr18:25729200-25737800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr18:25729200-25739000	Weak transcription	A549	lung
43	chr18:25729400-25732600	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr18:25729800-25730400	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr18:25729800-25730600	Flanking Active TSS	Fetal Heart	heart
46	chr18:25729800-25732600	Enhancers	Brain Germinal Matrix	brain
47	chr18:25730000-25730200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr18:25730000-25730200	Enhancers	HUES64 Cell Line	embryonic stem cell
49	chr18:25730000-25730200	ZNF genes & repeats	Aorta	Aorta
50	chr18:25730000-25730200	Enhancers	Spleen	Spleen

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