Variant report

Variant	rs12312532
Chromosome Location	chr12:58358250-58358251
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10219484	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11172395	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11172396	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11504032	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11504034	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv559046	chr12:58162085-58478598	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	261 gene(s)	inside rSNPs	diseases
2	nsv523853	chr12:58350631-58386722	ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv975500	chr12:58351052-58362673	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:58336200-58359600	Weak transcription	A549	lung
2	chr12:58336400-58359600	Weak transcription	HMEC	breast
3	chr12:58337200-58358400	Weak transcription	HepG2	liver
4	chr12:58351200-58359400	Weak transcription	K562	blood
5	chr12:58352400-58359400	Weak transcription	Placenta	Placenta
6	chr12:58357800-58360000	Enhancers	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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