Variant report
| Variant | rs12313116 |
|---|---|
| Chromosome Location | chr3:133405791-133405792 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:58)
| rs_ID | r2[population] |
|---|---|
| rs10843526 | 1.00[AFR][1000 genomes] |
| rs11050472 | 0.85[AFR][1000 genomes] |
| rs11050473 | 0.89[AFR][1000 genomes] |
| rs11050474 | 0.89[AFR][1000 genomes] |
| rs11050475 | 0.89[AFR][1000 genomes] |
| rs11050476 | 0.89[AFR][1000 genomes] |
| rs11050477 | 0.89[AFR][1000 genomes] |
| rs11050478 | 0.89[AFR][1000 genomes] |
| rs11050480 | 0.89[AFR][1000 genomes] |
| rs11050481 | 0.89[AFR][1000 genomes] |
| rs11050484 | 0.89[AFR][1000 genomes] |
| rs11050485 | 0.89[AFR][1000 genomes] |
| rs11050486 | 0.89[AFR][1000 genomes] |
| rs11050487 | 0.89[AFR][1000 genomes] |
| rs11050488 | 0.84[AFR][1000 genomes] |
| rs11050489 | 0.84[AFR][1000 genomes] |
| rs11050491 | 0.89[AFR][1000 genomes] |
| rs11050492 | 0.89[AFR][1000 genomes] |
| rs11050493 | 0.89[AFR][1000 genomes] |
| rs11050494 | 0.89[AFR][1000 genomes] |
| rs11050498 | 1.00[AFR][1000 genomes] |
| rs11050499 | 1.00[AFR][1000 genomes] |
| rs11050500 | 1.00[AFR][1000 genomes] |
| rs11050501 | 1.00[AFR][1000 genomes] |
| rs11050502 | 1.00[AFR][1000 genomes] |
| rs11050503 | 1.00[AFR][1000 genomes] |
| rs11050504 | 1.00[AFR][1000 genomes] |
| rs11050505 | 1.00[AFR][1000 genomes] |
| rs11050507 | 0.90[AFR][1000 genomes] |
| rs12298049 | 0.89[AFR][1000 genomes] |
| rs12300211 | 0.89[AFR][1000 genomes] |
| rs12301279 | 1.00[AFR][1000 genomes] |
| rs12304166 | 0.89[AFR][1000 genomes] |
| rs12304207 | 0.89[AFR][1000 genomes] |
| rs12304335 | 0.89[AFR][1000 genomes] |
| rs12306775 | 1.00[AFR][1000 genomes] |
| rs12307862 | 0.89[AFR][1000 genomes] |
| rs12314833 | 0.90[AFR][1000 genomes] |
| rs12315210 | 1.00[AFR][1000 genomes] |
| rs12315352 | 1.00[AFR][1000 genomes] |
| rs12315716 | 0.89[AFR][1000 genomes] |
| rs12317098 | 0.89[AFR][1000 genomes] |
| rs12317199 | 0.89[AFR][1000 genomes] |
| rs12317899 | 0.89[AFR][1000 genomes] |
| rs12318071 | 0.89[AFR][1000 genomes] |
| rs12318077 | 0.89[AFR][1000 genomes] |
| rs12320006 | 0.89[AFR][1000 genomes] |
| rs12320007 | 0.89[AFR][1000 genomes] |
| rs12321517 | 0.89[AFR][1000 genomes] |
| rs12321611 | 0.89[AFR][1000 genomes] |
| rs13313229 | 0.89[AFR][1000 genomes] |
| rs13313230 | 0.89[AFR][1000 genomes] |
| rs13313236 | 0.89[AFR][1000 genomes] |
| rs1438510 | 0.89[AFR][1000 genomes] |
| rs1438511 | 0.89[AFR][1000 genomes] |
| rs1599733 | 1.00[AFR][1000 genomes] |
| rs2101263 | 0.90[AFR][1000 genomes] |
| rs73071616 | 0.82[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv516081 | chr3:133399702-133412094 | Weak transcription Enhancers ZNF genes & repeats | TF binding region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:133393800-133406800 | Weak transcription | Brain Substantia Nigra | brain |
