Variant report

Variant	rs12314159
Chromosome Location	chr12:106178821-106178822
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 105 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs10507199	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10732669	0.87[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10732670	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10735409	0.92[ASN][1000 genomes]
rs10735410	0.93[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs10735411	0.91[ASN][1000 genomes]
rs10735412	0.93[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10735413	0.93[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10746048	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10746050	0.93[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs10778440	0.92[ASN][1000 genomes]
rs10778441	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10778442	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10778446	1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs10778447	0.90[ASN][1000 genomes]
rs10778448	0.94[ASN][1000 genomes]
rs10861505	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10861511	0.86[ASN][1000 genomes]
rs10861512	0.92[ASN][1000 genomes]
rs10861513	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10861514	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10861515	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10861517	0.90[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs11112724	0.92[ASN][1000 genomes]
rs11112729	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11112730	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11112731	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11112733	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11112736	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11112737	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11112739	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11112747	0.94[ASN][1000 genomes]
rs11112748	0.84[AFR][1000 genomes]
rs11833529	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12305658	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12370329	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1421445	0.94[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1421446	0.94[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1421447	0.93[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1477238	0.95[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1477239	0.99[ASN][1000 genomes]
rs1477240	0.99[ASN][1000 genomes]
rs1477242	0.99[ASN][1000 genomes]
rs1549103	0.81[ASN][1000 genomes]
rs2052428	0.94[ASN][1000 genomes]
rs2111975	0.93[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2111976	0.97[ASN][1000 genomes]
rs2374538	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2888869	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4270016	0.89[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs4337138	0.90[ASN][1000 genomes]
rs4346066	0.82[ASN][1000 genomes]
rs4430602	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4438139	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4499093	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4509865	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4509866	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.93[YRI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4516058	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4600310	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4609683	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4609684	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4964160	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4964161	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4964409	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4964410	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4964411	0.94[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.94[ASN][1000 genomes]
rs4964413	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4964414	0.84[ASN][1000 genomes]
rs4964415	0.93[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4964416	0.92[ASN][1000 genomes]
rs6539230	0.93[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs6539231	0.92[ASN][1000 genomes]
rs7302776	0.93[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7303862	0.88[ASN][1000 genomes]
rs7307825	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7307959	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7309925	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7311274	0.93[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7313258	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7313292	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7485224	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs750207	0.94[ASN][1000 genomes]
rs750208	0.89[ASN][1000 genomes]
rs7954139	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7954308	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7954604	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7956555	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7964548	0.82[ASN][1000 genomes]
rs7968050	0.92[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7968132	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7970318	0.93[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7979193	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7979632	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs878612	0.93[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9634186	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9634187	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9634188	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9634189	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9634227	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9634228	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9634229	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039068	chr12:105935786-106211250	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1047810	chr12:106067049-106246582	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1040261	chr12:106068992-106246582	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv15321	chr12:106162101-106182216	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106177000-106179800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr12:106177200-106179000	Enhancers	Primary hematopoietic stem cells	blood
3	chr12:106177200-106179200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr12:106177200-106179200	Enhancers	Fetal Thymus	thymus
5	chr12:106177400-106179000	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr12:106177400-106179200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr12:106177400-106179600	Enhancers	GM12878-XiMat	blood
8	chr12:106177600-106179000	Enhancers	Primary B cells from peripheral blood	blood
9	chr12:106177600-106179400	Enhancers	Lung	lung
10	chr12:106177800-106179400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
11	chr12:106178000-106179400	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr12:106178200-106179000	Enhancers	Fetal Stomach	stomach
13	chr12:106178400-106179000	Enhancers	Right Ventricle	heart
14	chr12:106178400-106179000	Enhancers	Stomach Smooth Muscle	stomach
15	chr12:106178600-106179000	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr12:106178600-106182400	Weak transcription	Psoas Muscle	Psoas
17	chr12:106178800-106179600	Weak transcription	Fetal Muscle Leg	muscle
18	chr12:106178800-106187400	Weak transcription	HSMMtube	muscle

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