Variant report

Variant	rs12314202
Chromosome Location	chr12:26371759-26371760
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11048432	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12313670	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12313736	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12318384	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1351334	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17381729	0.95[EUR][1000 genomes]
rs58395664	0.81[AMR][1000 genomes]
rs60666103	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73295005	0.81[AMR][1000 genomes]
rs73295081	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73295090	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73295095	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7955562	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7955569	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7971293	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv648	chr12:26330291-26375186	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv817432	chr12:26355515-26873664	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv1840338	chr12:26367307-26390319	Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26358600-26379000	Weak transcription	Fetal Muscle Leg	muscle
2	chr12:26359200-26379600	Weak transcription	Aorta	Aorta
3	chr12:26359600-26379000	Weak transcription	Brain Angular Gyrus	brain
4	chr12:26360000-26372800	Weak transcription	Brain Hippocampus Middle	brain
5	chr12:26365000-26377400	Weak transcription	Brain Anterior Caudate	brain
6	chr12:26366000-26379400	Weak transcription	Ovary	ovary
7	chr12:26366600-26390600	Weak transcription	HSMMtube	muscle
8	chr12:26367400-26372800	Weak transcription	Psoas Muscle	Psoas
9	chr12:26367400-26379000	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr12:26368600-26372000	Weak transcription	Fetal Heart	heart
11	chr12:26368600-26372400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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