Variant report

Variant	rs12315269
Chromosome Location	chr12:124537944-124537945
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12310408	1.00[AMR][1000 genomes]
rs12314727	1.00[AMR][1000 genomes]
rs59794984	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899580	chr12:124499542-124565258	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv455734	chr12:124511908-124772515	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv560538	chr12:124511908-124772515	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:124530600-124539000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr12:124534600-124538200	Weak transcription	Fetal Kidney	kidney
3	chr12:124534600-124538400	Weak transcription	Fetal Muscle Leg	muscle
4	chr12:124534600-124538400	Weak transcription	Stomach Mucosa	stomach
5	chr12:124534800-124538600	Weak transcription	Fetal Heart	heart
6	chr12:124536800-124538200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr12:124537200-124538400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr12:124537600-124539000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr12:124537600-124539200	Enhancers	Fetal Stomach	stomach
10	chr12:124537600-124539400	Enhancers	Placenta	Placenta

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links