Variant report

Variant	rs12315857
Chromosome Location	chr12:40343254-40343255
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11174333	0.80[YRI][hapmap]
rs12311976	0.84[YRI][hapmap]
rs12317006	1.00[YRI][hapmap]
rs12317250	1.00[YRI][hapmap]
rs12318369	1.00[YRI][hapmap]
rs7302067	0.93[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046428	chr12:40226283-40439843	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv541481	chr12:40226283-40439843	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1052202	chr12:40322607-40406760	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40334200-40343600	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr12:40337400-40350600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr12:40338000-40366000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr12:40338600-40346600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr12:40340800-40346400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr12:40341000-40347600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr12:40343000-40346600	Enhancers	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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