Variant report

Variant	rs12316109
Chromosome Location	chr12:117308499-117308500
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11068221	1.00[AMR][1000 genomes]
rs11068222	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12227855	0.83[AMR][1000 genomes]
rs12311024	1.00[AMR][1000 genomes]
rs12311027	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28489658	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs57654988	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58117463	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73393784	0.98[AFR][1000 genomes]
rs73393787	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73393789	0.83[AMR][1000 genomes]
rs73393793	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73393795	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73393797	0.83[AMR][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117298400-117311800	Weak transcription	Right Atrium	heart
2	chr12:117300000-117314200	Weak transcription	Thymus	Thymus
3	chr12:117303000-117311600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr12:117303000-117312200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr12:117303000-117313600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr12:117304600-117311400	Weak transcription	Fetal Thymus	thymus
7	chr12:117306400-117312400	Weak transcription	Primary B cells from cord blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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