Variant report

Variant	rs12316662
Chromosome Location	chr12:66996779-66996780
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12310597	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56188466	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56307984	0.94[EUR][1000 genomes]
rs57849401	0.80[EUR][1000 genomes]
rs7968342	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052503	chr12:66293898-67269495	Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv541515	chr12:66293898-67269495	Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv1040682	chr12:66750103-67328053	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv832449	chr12:66885819-67069953	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv3325978	chr12:66920993-67016708	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:66994400-66997000	Enhancers	Brain Germinal Matrix	brain
2	chr12:66994800-66997000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr12:66994800-66997200	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr12:66994800-66997400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr12:66994800-66997400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr12:66994800-66998000	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr12:66995000-66998000	Enhancers	H1 Cell Line	embryonic stem cell
8	chr12:66995400-66997400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr12:66995400-67000600	Weak transcription	Fetal Brain Male	brain
10	chr12:66996400-66998200	Enhancers	Fetal Kidney	kidney
11	chr12:66996600-66997600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr12:66996600-66998000	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr12:66996600-67000000	Weak transcription	Fetal Brain Female	brain
14	chr12:66996600-67007600	Weak transcription	H9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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